STAN_HOME = ../../../../..
PGM = seeds# 
CXX = clang++ 
CPPFLAGS = -I $(STAN_HOME)/lib/boost_1.51.0 -I$(STAN_HOME)/lib/eigen_3.1.1 -I$(STAN_HOME)/lib/eigen_3.1.1/unsupported  -I $(STAN_HOME)/src
LIBFLAGS = -L$(STAN_HOME)/bin -lstan 

$(PGM) :
	$(STAN_HOME)/bin/stanc --name=seeds  seeds.stan 
	$(CXX) -O3 -DNDEBUG $(CPPFLAGS) $(PGM).cpp -o $(PGM) $(LIBFLAGS) 
	./seeds --data=seeds.Rdata

clean :
	rm -f seeds.cpp samples.csv seeds
