STAN_HOME = ../../../../..
PGM = leuk
CXX = clang++ 
CPPFLAGS = -I $(STAN_HOME)/lib/boost_1.51.0 -I$(STAN_HOME)/lib/eigen_3.1.1 -I$(STAN_HOME)/lib/eigen_3.1.1/unsupported  -I $(STAN_HOME)/src
LIBFLAGS = -L$(STAN_HOME)/bin -lstan 

$(PGM) :
	$(STAN_HOME)/bin/stanc  --name=$(PGM)  $(PGM).stan
	$(CXX)   -O3  -DNDEBUG $(CPPFLAGS) $(PGM).cpp -o $(PGM) $(LIBFLAGS) 
	./$(PGM) --data=$(PGM).Rdata # --iters=2000

clean :
	rm -rf $(PGM).cpp samples.csv $(PGM) 
